PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g14680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 149aa    MW: 16625 Da    PI: 9.4892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g14680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18656155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Vang01g14680.1  6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 56
                    59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.33E-23664No hitNo description
SMARTSM003809.4E-39770IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-20765IPR016177DNA-binding domain
PROSITE profilePS5103222.3764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32765IPR001471AP2/ERF domain
PfamPF008471.4E-11756IPR001471AP2/ERF domain
PRINTSPR003672.0E-10819IPR001471AP2/ERF domain
PRINTSPR003672.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVQAKKKFRG VRQRQWGSWV SEIRHPLLKR RVWLGTFETA EAAARAYDQA AILMNGRNAK  60
TNFPTRALNE AEGCTNSTVC EDPFSSPNVL SEDLSRKLKR CCRDPSPSLT CLRLDADNSH  120
IGVWQKGAGA HSDSNWIMVI DNLIIVLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-17666162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-17672470ATERF1
3gcc_A6e-17672470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163907.12e-76hypothetical protein PHAVU_L006500g
SwissprotQ3E9586e-60SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0L9TBH32e-91A0A0L9TBH3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RP182e-91A0A0S3RP18_PHAAN; Uncharacterized protein
STRINGGLYMA17G31900.18e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.19e-54ERF family protein